This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

orthosData

This is the development version of orthosData; to use it, please install the devel version of Bioconductor.

Data for the orthos package

Bioconductor version: Development (3.18)

`orthosData` is the companion ExperimentData package to the `orthos` R package for mechanistic studies using differential gene expression experiments. It provides functions for retrieval from ExperimentHub and local caching of the models and datasets used internally in orthos.

Author: Panagiotis Papasaikas [aut, cre] , Charlotte Soneson [aut] , Michael Stadler [aut] , Friedrich Miescher Institute for Biomedical Research [cph]

Maintainer: Panagiotis Papasaikas <panagiotis.papasaikas at fmi.ch>

Citation (from within R, enter citation("orthosData")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("orthosData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("orthosData")
1. Introduction to orthos HTML R Script
Reference Manual PDF

Details

biocViews ExperimentData, ExperimentHub, RNASeqData
Version 0.99.4
License MIT + file LICENSE
Depends
Imports AnnotationHub, BiocFileCache, ExperimentHub, HDF5Array, stringr, SummarizedExperiment
Linking To
Suggests BiocStyle, ggplot2, knitr, rmarkdown, testthat
System Requirements
Enhances
URL https://github.com/fmicompbio/orthosData
Bug Reports https://github.com/fmicompbio/orthosData/issues
See More
Depends On Me
Imports Me orthos
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package orthosData_0.99.4.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/orthosData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/orthosData
Package Short Url https://bioconductor.org/packages/orthosData/
Package Downloads Report Download Stats