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Heatplus

Heatmaps with row and/or column covariates and colored clusters

Bioconductor version: Release (3.17)

Display a rectangular heatmap (intensity plot) of a data matrix. By default, both samples (columns) and features (row) of the matrix are sorted according to a hierarchical clustering, and the corresponding dendrogram is plotted. Optionally, panels with additional information about samples and features can be added to the plot.

Author: Alexander Ploner <Alexander.Ploner at ki.se>

Maintainer: Alexander Ploner <Alexander.Ploner at ki.se>

Citation (from within R, enter citation("Heatplus")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Heatplus")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Heatplus")
Annotated and regular heatmaps PDF R Script
Commented package source PDF R Script
Old functions (deprecated) PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Microarray, Software, Visualization
Version 3.8.0
In Bioconductor since BioC 1.8 (R-2.3) (17.5 years)
License GPL (>= 2)
Depends
Imports graphics, grDevices, stats, RColorBrewer
Linking To
Suggests Biobase, hgu95av2.db, limma
System Requirements
Enhances
URL https://github.com/alexploner/Heatplus
Bug Reports https://github.com/alexploner/Heatplus/issues
See More
Depends On Me phenoTest, tRanslatome
Imports Me
Suggests Me mtbls2, RforProteomics
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Heatplus_3.8.0.tar.gz
Windows Binary Heatplus_3.8.0.zip
macOS Binary (x86_64) Heatplus_3.8.0.tgz
macOS Binary (arm64) Heatplus_3.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Heatplus
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Heatplus
Bioc Package Browser https://code.bioconductor.org/browse/Heatplus/
Package Short Url https://bioconductor.org/packages/Heatplus/
Package Downloads Report Download Stats