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yamss

Tools for high-throughput metabolomics

Bioconductor version: Release (3.17)

Tools to analyze and visualize high-throughput metabolomics data aquired using chromatography-mass spectrometry. These tools preprocess data in a way that enables reliable and powerful differential analysis.

Author: Leslie Myint [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Leslie Myint <leslie.myint at gmail.com>

Citation (from within R, enter citation("yamss")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("yamss")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("yamss")
yamss User's Guide HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ImmunoOncology, MassSpectrometry, Metabolomics, Software
Version 1.26.0
In Bioconductor since BioC 3.4 (R-3.3) (7 years)
License Artistic-2.0
Depends R (>= 3.5.0), methods, BiocGenerics(>= 0.15.3), SummarizedExperiment
Imports IRanges, stats, S4Vectors, EBImage, Matrix, mzR, data.table, grDevices, limma
Linking To
Suggests BiocStyle, knitr, rmarkdown, digest, mtbls2, testthat
System Requirements
Enhances
URL https://github.com/hansenlab/yamss
Bug Reports https://github.com/hansenlab/yamss/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package yamss_1.26.0.tar.gz
Windows Binary yamss_1.26.0.zip (64-bit only)
macOS Binary (x86_64) yamss_1.26.0.tgz
macOS Binary (arm64) yamss_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/yamss
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/yamss
Bioc Package Browser https://code.bioconductor.org/browse/yamss/
Package Short Url https://bioconductor.org/packages/yamss/
Package Downloads Report Download Stats