This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

yamss

Tools for high-throughput metabolomics

Bioconductor version: Release (3.17)

Tools to analyze and visualize high-throughput metabolomics data aquired using chromatography-mass spectrometry. These tools preprocess data in a way that enables reliable and powerful differential analysis.

Author: Leslie Myint [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Leslie Myint <leslie.myint at gmail.com>

Citation (from within R, enter citation("yamss")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("yamss")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("yamss")
yamss User's Guide HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ImmunoOncology, MassSpectrometry, Metabolomics, Software
Version 1.26.0
In Bioconductor since BioC 3.4 (R-3.3) (7 years)
License Artistic-2.0
Depends R (>= 3.5.0), methods, BiocGenerics(>= 0.15.3), SummarizedExperiment
Imports IRanges, stats, S4Vectors, EBImage, Matrix, mzR, data.table, grDevices, limma
Linking To
Suggests BiocStyle, knitr, rmarkdown, digest, mtbls2, testthat
System Requirements
Enhances
URL https://github.com/hansenlab/yamss
Bug Reports https://github.com/hansenlab/yamss/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package yamss_1.26.0.tar.gz
Windows Binary yamss_1.26.0.zip (64-bit only)
macOS Binary (x86_64) yamss_1.26.0.tgz
macOS Binary (arm64) yamss_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/yamss
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/yamss
Bioc Package Browser https://code.bioconductor.org/browse/yamss/
Package Short Url https://bioconductor.org/packages/yamss/
Package Downloads Report Download Stats