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EnMCB

This is the development version of EnMCB; for the stable release version, see EnMCB.

Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models

Bioconductor version: Development (3.18)

Creation of the correlated blocks using DNA methylation profiles. Machine learning models can be constructed to predict differentially methylated blocks and disease progression.

Author: Xin Yu

Maintainer: Xin Yu <whirlsyu at gmail.com>

Citation (from within R, enter citation("EnMCB")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("EnMCB")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EnMCB")
vignette HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DNAMethylation, MethylationArray, Normalization, Software, SupportVectorMachine
Version 1.13.0
In Bioconductor since BioC 3.11 (R-4.0) (3.5 years)
License GPL-2
Depends R (>= 4.0)
Imports survivalROC, glmnet, rms, mboost, Matrix, igraph, methods, survivalsvm, ggplot2, boot, e1071, survival, BiocFileCache
Linking To
Suggests SummarizedExperiment, testthat, Biobase, survminer, affycoretools, knitr, plotROC, limma, rmarkdown
System Requirements
Enhances
URL
Bug Reports https://github.com/whirlsyu/EnMCB/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package EnMCB_1.13.0.tar.gz
Windows Binary EnMCB_1.13.0.zip
macOS Binary (x86_64) EnMCB_1.13.0.tgz
macOS Binary (arm64) EnMCB_1.13.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/EnMCB
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/EnMCB
Bioc Package Browser https://code.bioconductor.org/browse/EnMCB/
Package Short Url https://bioconductor.org/packages/EnMCB/
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